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Construction and characterization of stage-specific subtractive expressed sequence tag (EST) libraries of the pinewood nematode, Bursaphelenchus xylophilus

  • 언어ENG
  • URLhttps://db.koreascholar.com/Article/Detail/290786
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한국응용곤충학회 (Korean Society Of Applied Entomology)
초록

The pinewood nematode, Bursaphelenchus xylophilus (Steinner & Buhrer) Nickle, has two different life stages according to several environmental factors: dispersal stage and propagative stages. The dispersal stage is closely related to the migration to other host pines, whereas the propagative stage is coupled to the direct cause of pine wilt. To establish expressed sequence tag (EST) database of two life cycles of B. xylophilus, subtractive EST libraries were constructed using suppressed subtractive hybridization (SSH). From 3,072 and 3,840 sequences of dispersal- and propagative-specific stage cDNA libraries, 1,927 and 2,604 clusters were generated, respectively, which were annotated by BLASTx and Gene ontology (GO). A total of 1,112 (57.7%) and 1,215 (46.7%) clusters from the dispersal- and propagative-specific stage cDNA libraries respectively had the matched BLASTx hits (E≤10-2), among which 913 (47.4%) and 960 (36.9%) were classified into three categories in Gene ontology. From GO database, some respective stage-specific genes were searched and estimated the relative transcripts level according to stages using the quantitative real-time PCR.

저자
  • Jae Soon Kang(Department of Agricultural Biotechnology, Seoul National University)
  • Hyoungsuk Lee(Polar Bio Center, Korea Polar Research Institute, KORDI)
  • Il Sung Moon(Nambu Forest Experiment Station, Korea Forest Research Institute)
  • Yi Lee(School of Plant Science & Bio-Resource, Chungbuk National University)
  • Si Hyeock Lee(Department of Agricultural Biotechnology, Seoul National University)