For the sustainable management of marine ecosystem in Masan Bay, we have to assess the carrying capacity and standard of target water quality. In this research, we assume that all pollutants loads are treated in Dukdong sewage treatment plant, then we simulate the physical-biological model for prediction water quality for the achievement of standard water quality. In 2001 year, for the achievement of COD 2.5 mg/L, we need to reduce COD 90 %, nitrogen 30 %, phosphate 90% than that of the present value. According to these results, the water quality of sewage treatment plant is required to treat COD 13.5 mg/L, nitrogen 33.3 mg/L, phosphate 6.0 mg/L. If the sewage treatment plant will be expanded much larger in 2011, it will need to be treated in COD 6.6 mg/L, nitrogen 2.5 mg/L, phosphate 5 mg/L for the achievement of water quality standard in COD 2.5 mg/L.