Background : Clematis trichotoma is a deciduous climber belonging to the family Ranunculaceae. This study was carried out to survey the effect of shading levels on growth characteristics in Clematis trichotoma seedling. Methods and Results : Seeds were collected from plants growing in the Mt. Kariwang Jeongseon, Gangwon-do in October 2013, and they were sown to 96 cell plug tray filled with Peatmoss (TKS-2) soil at March, 2015. The experiment was performed with four different shading levels (0, 30, 60, 90%) at July, 2015. According to the experiment, plant height was the highest under 90% of shading. It was found that fresh weight and dry weight of clematis trichotoma were the highest under 90% of shading. The leaf number was the highest under 30% of shading. The leaf number decreased as the shading level increased. Root number and length were the highest under 90% of shading. Conclusion : According to the results, Clematis trichotoma seedling showed the highest growth under 90% shading.

Background : Scrophularia koraiensis is a herbaceous perennials belonging to the family Scrophulariaceae. This study was carried out to survey the effect of soil types on growth characteristics in Scrophularia koraiensis seedling. Methods and Results : Seeds were collected from plants growing in the Mt. Kariwang Jeongseon, Gangwon-do in September 2014, and they were sown to 128 cell plug tray filled with Peatmoss (TKS-2) soil at March, 2015. The experiment was performed with four different soil types (Peatmoss, Peatmoss + Perlite, Peatmoss + Granite soil, Commercial soil). According to the experiment, stem diameter was the highest under commercial soil. The leaf width and length were the highest under commercial soil. Main root diameter and lengh were the highest under commercial soil. Conclusion : According to the results, Scrophularia koraiensis seedling showed the highest growth in commercial soil.

Background : Scrophularia koraiensis is a herbaceous perennials belonging to the family Scrophulariaceae. This study was carried out to survey the effect of LED on root develop characteristics in Scrophularia koraiensis seedling. Methods and Results : Seeds were collected from plants growing in the Mt. Kariwang Jeongseon, Gangwon-do in September 2014, and they were sown to 128 cell plug tray filled with Peatmoss (TKS-2) soil at March, 2015. The experiment was performed with three different LED (Blue, Red, Blue + Red) at July, 2015. Morphological characteristics of root (total root length, root projet area, root surface area, root diameter and root volume) were analyzed with WinRHIZO software. Seedling root growth of scrophularia koraiensis was surveyed to be the highest at the Blue + Red LED in all measuring. Total root length was measured high in the order of Blue + Red, Red, Blue LED. Conclusion : According to the results, Scrophularia koraiensis seedling showed the highest root growth in Blue + Red LED.

Low temperature is a major factor restrict to growth and limiting productivity of rice crops. We used a cDNA microarray approach to monitor the expression profile of rice (Oryza sativa) under chilling stress and identified 20 chilling inducible genes in previously study. Ten such genes encoding bHLH, metal transporter and, zinc finger protein with unknown functions showed a significant change in expression under various abiotic stresses. Among them, OsCHI1 (Os07g15460), OsCHI2 (Os02g43660), and OsCHI3 (Os01g61160), were selected for further study. They have structural features such as metal-binding signature sequences in their protein sequences, and OsCHI genes were expressed in root of rice seedling and induced in chilling and salt or drought. Expression of OsCHI1, OsCHI3 and OsCHI2 were targeted to membrane and ER when transiently expressed in tobacco cell, respectively. The Arabidopsis (Arabidopsis thaliana) transgenic plants overexpressing showed increased tolerance to salt and drought stress in the seed germination and root elongation than that of wild type. This comprehensive study provides insight into the biological function of OsCHIs, which may be useful in understanding how rice plants adapt to unfavorable environmental conditions.

For sensitive and accurate gene expression analysis, normalization of gene expression data against housekeeping genes is required. There are conventional housekeeping gene (e.g. ACT) that primarily function as an internal control of transcription. In this study, we performed an in silico analysis of 278 rice gene expression samples (GSM) in order to identify the gene that is most consistently expressed. Based on this analysis, we identified novel candidate housekeeping genes that displayed improved stability among the cross experimental conditions. Furthermore four of the most conventional housekeeping genes were included in our 30 other housekeeping genes among the most stable genes. Therefore, these 30 genes can he used to normalize transcription results in gene expression studies on rice at a broad range of experimental conditions.

This study is to survey the ultrastructure of gamete cells and micropyle of pre-fertilized and post-fertilized eggs after HCG hormone treatment by transmission and scanning electron microscopy (TEM and SEM) in E. akaara, E. bruneus and E. septemfasciatus. These fishes are economical importance species for Jeju coastal area resources. In spite of its an importance resources, details studies on the ultrastructural aspects of gamete cells for its reproductive biology have not been undertaken. Morphological features of ovulation process have been studied during its normal occurrence in the reproductive cycle of these fish by light microscopy. Moreover, it has been studied for many years to induce spawning by environmental factors (day length, water temperature etc) or injection of HCG for ovulation in these species. Studies on the micropyle was mainly focused on the eggs of insects, fresh water and a few sea water fishes. Micropylar structure of fish displays morphological characteristics of interspecies-specific by inhabitant environment and spawning feature. On the other hand, it is an importance cue for a taxonomical indicator and identification fish eggs. SEM studies were performed on growing and mature oocytes obtained by stripping and cannulation from 3 grouper species sampled between July and August in spawning season. The outer layer of chorion of preovulatory growing stage oocytes could be divided into four layers; zona pellucida, follicular cell layers consisted of granulosa and thecal cells layer and the most outer ovigerous lamella. Ovulation process of mature stage oocytes initiated by rupture of ovigerous lamella and ovulated by contraction of follicular cell layers. Besides, the micropylar shape of ripe stage oocytes in E. akaara, E. bruneus and E. septemfasciatus presented volcano or crateriform-like cylindrical form. Internal structure of micropylar vestibule displayed cylindrical clockwise 8 or 10 spiral arrangement structure in these species. The micropyle diameter and apparatus at the animal pole differ significantly among the 3 species. The difference in their diameters suggests species-specific in the correlation between spermatozoal head size and micropylar diameter for polyspermy prevention and hybridization during fertilization. Besides, after artificial fertilization, the vestibule morphologically transformed into dom-shape and pillar-shape for fertilization cone formation. Pores of various sizes in the 3 grouper species were somewhat regularly distributed in concentric circles only around the micropyle. In particular, large pores had numerous gill filament-shaped projections connected to oolemma. These structures are suggested to be related to gas exchange, osmoregulation, and micronutrient influx or efflux between eggs and water during fertilization and egg development. In addition, spermatozoa ultrastructure was examined in 3 grouper species. TEM investigation revealed that, in all species, spermatozoa display a round head, a nucleus containing highly condensed, filamentous chromatin clusters, no acrosome, a short midpieces consisting of numerous mitochondria and the proximal and distal centrioles and a flagellum exhibiting the typical axoneme structure (9+2). Especial, both E. akaara and E. bruneus display regular laternal fins in flagella, but in E. septemfasciatus, no fins in flagella with hook shape tails.

MYB proteins are a superfamily of transcription factors (TF) that play regulatory roles in developmental processes and resistance mechanism in plants. We identified 130 and 109 genes in the MYB superfamily from an analysis of the complete Arabidopsis and rice genome sequence. Although microarray based transcriptome analysis approach allows the investigation of the biological networks of MYB TF in DNA level, the underling mechanisms related to their functional role is not fully understood. In this work, we performed meta-analysis of public microarray data that analyzed with Arabidopsis and rice using co-expression analysis. A phylogenetic comparison of the members of this superfamily were performed with Sorghum bicolour to suggested that MYB super family underwent a rapid expansion their evolutionary times. We identified conserved expression pairs which play important role in transcription. Our comprehensive analysis of this huge transcription factor of Arabidopsis and rice may shed further light on the possible biological roles of the MYB TF in various plants.

Rapid extension of genomic database leads to the remarkable advance of functional genomics. This study proposes a novel methodology of functional analysis using 5-methyltrytophan (5 MT) mutant together with their 2-DE analysis and public microarray database. A total of 24 proteins was changed in 5 MT mutant and four remarkably different expressed proteins were identified. Among them, three spots were converted to Affymetrix probe. A total of 155 microarray samples from Gene Expression Omnibus (GEO) in NCBI was retrieved and followed by constructing gene co-expression networks over a broad range of biological issues through Self-Organising Tree Algorithm. Three co-expressing gene clusters were retrieved and each functional categorization with differential expression pattern was exhibited from 5 MT resistance mutant rice. It was indicated new co-expression networks in the mutant. This study suggests that on investigating possibility which correspond 2-DE to microarray database with their full potential.

Most gene functions of biochemical pathways were still unexplored, especially interactions of constituent genes. We attempted to uncover interaction network of biochemical pathways via a survey of co-expression clusters, which we have constructed from the NCBI GEO database, and then to define key genes of networks with expression correlations between members. Top 20 pathways with high numbers of individual genes were retrieved from 178 pathways. One pathway, ‘removal of superoxide radicals’ was excluded for further study, evidencing somewhat low degree (16%, 13 out of 79 genes) of mapped probes. We employed expression correlations of random pairs of 1,000 randomly selected genes for determining a cut off r-value for gene networks. Numbers of interactions with a significant expression correlation values between members might evidence that “hub genes” play key roles among a given pathway genes. For example most interactive pathway, ‘tRNA charging pathway’, that is composed of 60 probes corresponding to genes showed 264 positive significant interactions between members of 47 genes while 5 negative interactions between members of 7 genes., evidencing ‘Os10g26050’ (methionyl-tRNA synthetase) gene with highest interactions is suggestive of a hub gene. These findings might provide some clues on evolutionary fate of co-expression genes including each of biochemical pathways, e.g. convergent evolution

The removal of nitrogen compounds from a wastewater is essential and it is often accomplished by biological process. An aerobic nitrate-removing bacterium was isolated from a municipal sewage treatment plant and soil. On the basis of its morphological, cultural and physiological characteristics and 16S rRNA sequencing data, this strain was identified as Pseudomonas fluorescens, and named as P. fluorescens K4. The optimal conditions of the initial pH and temperature of media for its growth were 7.0~8.0 and 30℃, respectively. P. fluorescens K4 was able to remove 99.9% of nitrate after 24 h in a culture. The strain could grow with a nitrate concentration up to 800 mg/l and was able to remove 99.9% of nitrate after 104 h of incubation. The optimal electron donor was sodium citrate for a nitrate removal. The strain K4 showed a capability of a complete nitrate removal when the initial C/N ratio was 1.0. An effect of the initial seed concentration was observed for a cell of 10% (v/v) for a nitrate removal. Especially P. fluorescens K4 could completely remove 200 mg/l ammonium for 3 days.

The genetic diversity was evaluated using RAPD and ISSR among natural populations and Korean wheat cultivars (Triticum aestivum). Understanding the genetic diversity of putative parental and wild stocks would be useful in wheat breeding programs. Ninety three populations were evaluated with fifty RAPD and three ISSR primers. A total of 185 RAPD and ISSR polymorphism were produced. These markers were considered to estimate the genetic distance among accessions. The genetic similarity ranged from 0.41 to 0.86. The dendrogram were constructed by using the UPGMA clustering algorithm based on genetic similarity. The genetic diversity within and among accession was assessed through Principal Component Analysis (PCA) for statistics analysis. In cluster analysis, four groups were clustered and 17 accessions were not clustered. The PCA was corresponded well to the result. This study provides basic information about the genetic relationships for breeding purposes.

This study was done to understand the G x E interaction of rice blast reaction for Japonica high quality rice varieties and to observe blast pattern for high quality varieties. Twenty one percent of the total sum of squares (SST) in blast reaction data of high quality Japonica varieties is attributed to genotype (G) by environment (E) interaction variation. This portion of blast response is higher than 8～12% of G x E effect in blast severity data obtained from various ecotypes of rice varieties. Blast response scores obtained from high quality Japonica varieties group were more severely affected by environment condition than mixed groups with Japonica and Indica varieties. Interaction Principal Component Analysis (IPCA) scores obtained from AMMI analysis for the leaf blast response implied variation of G x E interaction. Correlation analysis suggested that IPCA1 was associated with latitude, maximum mean temperature, precipitation and mean cloud amount. IPCA2 was associated with mean relative humidity, and IPCA3 was associated with precipitation and minimum relative humidity. Pattern analysis generated nine genotype clusters according to blast reaction over 11 regions. Collectively, the A, B, C, and D groups were susceptible to rice blast, where as the E, F, G, H, and I groups were relatively resistant to rice blast through multi-location blast nursery test. Relationship between the identified genes of high quality varieties and blast scores at each test site in the level of group could be analyzed based on the results from G x E Interaction analysis.

‘Taegang’ is a new six-rowed covered barley cultivar developed by the National Institute of Crop Science (NICS), R.D.A. This cultivar is developed from a cross between ‘Suwon287’ and ‘Olbori’ in 1992. An F8 selection was made at NCES in 2000 and it was te

A new oat (Avena sativa L.) cultivar 'Darkhorse' was developed by Honam Agricultural Research Institute (HARI) m2005. It was released because ofits earlmess, high forage yield potential and adaptability for late summer sowing. It was devel-oped from the a