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Draft mitochondrial genome of the medicinal mushroom Sanghuangporus sanghuang
- 언어ENG
- URLhttps://db.koreascholar.com/Article/Detail/348445
Sanghuangporus sanghuang (Hymenochaetaceae, Agaricomycetes) is a medicinal mushroom which has gained particular attention in Korea as a natural immune booster and a cancer suppressor. Recent molecular phylogenetic studies clarified the species concept of S. sanghuang extensively used in Asia including Korea, China, and Japan. In this study, we assembled its mitochondrial genome and identified the locations and functions of genes and coding regions using next-generation sequencing. Raw sequencing data was produced using PacBio approach, and assembled through hierarchical genome assembly process (HGAP). Determining the mitocondrial regions GeSeq and Artemis annotation tools were used. And the resulting gene map was visualized using OGDraw software. A total of 108 reads was aligned with a coverage of 11.87X. The entire mitochondrial genome was 111,734 bp in length, in which 24 proteins and 46 transfer RNAs were recognized. The overall base composition is 38.37% A, 38.42% T, 11.05% C and 12.14% G with an GC content of 23.2%. This mitochondrial genome data can be used to understand its phylogenetic relationship and taxonomic resolution and as a source of markers for population and species delimitation.
