Overview of molecular systematics of Cordyceps and its evolution in host affiliation
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Cordyceps sensu lato is known as one of the largest genera in hypocrealean fungi and largest group of entomopathogenic fungi in Ascomycota. Approximately 400 species are members of Cordyceps s. l. and most of them are obligate symbionts of 10 orders of arthropods and false truffles specifically parasitizing Elaphomyces spp. Recently, Cordyceps s. l. was reclassified into Cordyceps sensu stricto, Elaphocordyceps, MetaCordyceps, and OphioCordyceps in three families (i.e., Clavicipitaceae, Cordycipitaceae, Ophiocordycipitaceae) with the evidence of recent multigene phylogenetic analyses coupled with morphological and ecological characters. With the closely related animal, plant and fungal associated genera (e.g., Balansia, Claviceps, Hypocrella and Torrubiella) of Cordyceps s. l., Cordyceps s. l. and its related genera in Hypocreales have been considered as one of the model systems in understanding the evolution of host affiliation in Kingdom Fungi. Here the overview of molecular systematic of Cordyceps was presented with its evolutionary hypotheses of host affiliation based on the ancestral state reconstruction from 162-taxon data set. In our results, the evolution of its host affiliation is largely characterized by frequent interkingdom host-jumps and ergot and grass endophytes (e.g., Balansia, Claviceps, Epichloe and Neotyphodium) are hypothesized to be derived from an ancestor that parasitized arthropods. Around 350 taxa have been included in the molecular phylogeny of Cordyceps s. l. after the new classification was proposed. Therefore, the progress and problems in current molecular phylogeny are also presented with introduction of the future research direction in molecular systematics and genomics of Cordyceps and its related genera.