In this study, non-point pollution sources in the Yeongsan river basin are analyzed; then, the priority regions (areas divided on a small scale) of management are selected for efficient water management of the Seungcheon and Jooksan reservoirs, which were constructed as one of the 4 major rivers restoration projects. The priority regions are decided by using the criteria of the excessive rate of target water quality, non-point pollution load per unit area, total TP load and down flow distance. The results of this study are as follows. The upper 10% of the priority regions for non-point pollution management includes YB15, YB05, YB10, YB24, YB14 and YB11 for the Seungcheon reservoir watershed, and YC24, YC25, YC30, YC34, YC22 and YC17 for the Jooksan reservoir watershed. However, a few regions in each of the Seungcheon and Jooksan reservoirs need to be selected in higher order, and the non-point pollution removal facilities in the regions need to be installed with respect to budget, urgent matter, and so on.