It is important to investigate the hull response of a fishing vessel in waves to ensure the safety of it and to keep excellent sea-keeping qualities. For this purpose, we measured the response of fishing vessels in waves using real sea experimental measuring system. We analyze the experimental data by statistical method and spectral analysis to get the characteristics of the response of vessels which have different tonnage. In this real sea experiment, we use three stern trawlers which are the training ship in university. We know that the distribution of experimental response have Gauss distribution and Rayleigh distribution and smaller vessels have larger response.