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Study of anthocyanin accumulation in lettuce cultivars by different environments with digital phenotyping and next generation sequencing (NGS) technologies

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  • URLhttps://db.koreascholar.com/Article/Detail/302759
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한국육종학회 (The Korean Breeding Society)
초록

Anthocyanin is known for positive health beneficial effects that including reduces age related oxidative stress and inflammatory responses. It was produced by vegetable crops and a lettuce is one of the crops. The general pathway of anthocyanin expression is well defined but it is not clear how environments effects on anthocyanin accumulation in a lettuce. Therefore we initiated to study interaction between anthocyanin expression and environment factors. Frist, we applied RGB leaf images in a lettuce to calculate anthocyanin areas in a leaflet with two different cultivars, different developmental stages, and different environments. Later, we attempted to capture RNA expression level with next generation sequence (NGS) RNA sequencing method called RNA-seq. As a result, combined two technologies showed that quantitate phenotypic data help to understand the gene expression of anthocyanin in lettuce cultivars.

저자
  • Sungyul Chang(Biomodulation Team, Natural Products Research Center, Korea Institute of Science and Technology (KIST))
  • Eun-Hee Soh(Seed Testing & Research Center, Korea Seed & Variety Service, Ministry for Food, Agriculture, Forestry & Fishery)
  • Chee Hark Harn(Biotechnology Institute, Nongwoo Bio. Co., Ltd.)
  • Hyoung Seok Kim(Biomodulation Team, Natural Products Research Center, Korea Institute of Science and Technology (KIST)) Corresponding Author