This study is the sequel of a companion paper (I. Algorithm) for assessment of the seismic performance evaluation of structure using ground motions selected by the proposed algorithm. To evaluate the effect of the correlation structures of selected ground motions on the seismic responses of a structure, three sets of ground motions are selected with and without consideration of the correlation structure. Nonlinear response history analyses of a 20-story reinforced concrete frame are conducted using the three sets of ground motions. This study shows that the seismic responses of the frames vary according to ground motion selection and correlation structures.