Soil-foundation-structure interaction (SFSI) is one of the important issues in the seismic design for evaluating the exact behavior of the system. A seismic design of a structure can be more precise and economical, provided that the effect of SFSI is properly taken into account. In this study, a series of the dynamic centrifuge tests were performed to compare the seismic response of the single degree of freedom(SDOF) structure on the various types of the foundation. The shallow and pile foundations were made up of diverse mass and different conjunctive condition, respectively. The test specimen consisted of dry sand deposit, foundation, and SDOF structure in a centrifuge box. Several types of earthquake motions were sequentially applied to the test specimen from weak to strong intensity of them, which is known as a stage test. Results from the centrifuge tests showed that the seismic responses of the SDOF structure on the shallow foundation and disconnected pile foundation decreased by the foundation rocking. On the other hand, those on the connected pile foundation gradually increased with intensity of input motion. The allowable displacement of the foundation under the strong earthquake, the shallow and the disconnected pile foundation, have an advantage in dissipating the earthquake energy for the seismic design.