Using a partial D-loop sequence of mtDNA, a comprehensive molecular evolutionary analysis was performed of the maternal lineages of the Jeju native pigs(JNPs) that presented in Jeju Island. A total of 100 DNA sequences from Asian domestic pigs(ADP), European domestic pigs(EDP), Asian wild boars(AWB), European wild boars(EWB), and JNPs were used for the molecular evolutionary analyses including phylogeny and network analyses. The most fitted model for the phylogenetic analysis was determined using hierarchical likelihood-ratio tests conducted by MrModeltest implemented in the PAUP package. A consensus tree was established from 5,000,000 iterations using the MR BAYS program. Three recognizable JNP groups–one(JNPE) in the European cluster and two(JNPA1 and JNPA2) in the Asian cluster–were detected in the estimated phylogenetic tree and network. The maternal lineage of JNPE was the most adjacent to that of EWB and a clear haplogroup sharing an identical haplotype(hap16) among 15 individuals of JNPE and 2 individuals of EWB was detected.

• In-Cheol Cho(Subtropical Livestock Research Institute, National Institute of Animal Science, RDA)
• Hee-Bok Park(Subtropical Livestock Research Institute, National Institute of Animal Science, RDA)
• Kwang-Soo Baek(Subtropical Livestock Research Institute, National Institute of Animal Science, RDA)
• Sang-Hyun Han(Educational Science Research Institute, Jeju National University)