In recent years, the number of earthquakes has increased worldwide. There has been an extreme increase on the Korea Peninsula, which is considered a safety zone for earthquakes. In particular, in the event of earthquakes, most structures on the Korea Peninsula are severely damaged, because most are not designed to withstand them. Damage to and destruction of civil structures, such as bridges, nuclear facilities, and dams, is worse than that of other structures. It is necessary to evaluate and predict the extent of damage by earthquake magnitude, as the magnitude of earthquakes is increasing as well as the frequency. A major feature of the occurrence of earthquakes is uncertainty. For this reason, it is necessary to adopt a stochastic approach, and studies using this approach are increasing. However, although there have been several studies on bridges and nuclear facilities, there have been few studies on probabilistic seismic risk evaluation for multi-functional weirs. Thus, this study presents 3D multi-functional weirs and performs a time history analysis by using LS-DYNA, a general structure analysis program. Probabilistic seismic fragility assessment is conducted by Monte Carlo simulation.