Storm surge height in the coastal area of Jeju Island was examined using the Princeton Ocean Model(POM) with a sigma coordinate system. Amongst the typhoons that had affected to Jeju Island for six years(1987 to 2003), the eight typhoons(Maemi, Rusa, Prapiroon, Olga, Yanni, Janis, Gladys and Thelma) were found to bring relatively huge damage . The storm surge height of these typhoons simulated in Jeju harbour and Seogwipo harbour corresponded relatively well with the observed value. The occurrence time of the storm surge height was different, but mostly, it was a little later than the observed time. Jeju harbour showed a higher storm surge height than Seogwipo harbour, and the storm surge height didn't exceed 1m in both of Jeju harbour and Seogwipo harbour. Maemi out of the eight typhoons showed the maximum storm surge height(77.97 cm) in Jeju harbour, and Janis showed the lowest storm surge height(5.3 cm) in Seogwipo harbour.