This study presented seasonal changes of the phytoplankton community in Junam reservoir by pollution and water quality of the lake. The water storage of the reservoir is 5.3 million ton, most of which are being utilized for agricultural, industrial and residential purposes. The annual precipitation during the investigation period was 1,868.9 ㎜, increasing by 20% from the average annual level of 1,506.7 ㎜ in 2009. The annual average water storage was 57.3%. It decreased during agricultural season and then increased again after monsoon rainfall. The loads of BOD were 3,799 ㎏day -1 , and 81% of them came from livestock and household. The TN and TP loads were 1,164 ㎏day -1 and 170 ㎏day -1 , respectively, and 76% of them came from livestock. We assessed water quality of the Junam reservoir using 17 variables. According to the result, the reservoir met the fourth grade, meaning slightly bad, because of high concentration of COD, SS and chlorophyll-a. Eutrophication assessment was conducted by revised Carlson's Index (TSIm, Aizaki), and it was found that the entire lake was eutrophicated with high chlorophyll-a concentration all through the year, except during February to April and in July. A total of 76 phytoplankton species were identified from the samples. Among them, the largest number of species were Chlorophyceae with 33 species(43.4%), followed by Bacilliophyceae with 27 species(35.5%), Cyanophyceae with 8 species(10.5%), and Cryptophyceae with species(10.5%). The total cell number of phytoplankton was the highest in October(7,884 cells mL -1 ) among Cyanophyceae and Bacilliophyceae. The seasonal succession of Chlorophyceae (Chlamydomonas spp.), Cyanophyceae(Microcystis aeruginosa) and Cryptophyceae(Rhodomonas spp.) was observed during January to May, July to September and October to December respectively.