Sonic hedgehog (Shh) signaling pathway plays a key role in the development of various vertebrate embryos and remains important in adults. Although Shh signaling pathway has widely been studied in post-implantation stage embryos, only few studies are reported about pre-implantation stage embryos. To investigate the effect of Shh on pre-implantation stage embryos, cyclopamine and purmorphamine were treated to embryos in culture. Cyclopamine acts as an antagonist of the hedgehog signaling because it has a high affinity to Smoothened, a key part of the hedgehog signaling pathway. On the other hand, purmorphamine activate Smoothened and acts as a Shh signaling agonist. The oocytes were collected after superovulation and parthenogenetically activated in Chatot, Ziomek, and Bavister medium (CZB) including 10 mM strontium for 5 hr. The activated oocytes were cultured in potassium simplex optimized medium (KSOM), KSOM with 5 uM of cyclopamine, KSOM with 1 uM of purmorphamine, or KSOM with both 5 uM of cyclopamine and 1 uM of purmorphamine. After 5.5 days in culture, there was no significant difference in blastocyst development among the four experimental groups. However, the hatching rate was increased in the groups containing purmorphamine, and the blastocysts of the purmorphamine-containing groups had higher total cell number than those of other two groups when the cells were counted after Hoechst33342 staining. Quantitative real-time PCR (qRT-PCR) shows the difference of gene expression level which are related to epithelial-mesenchymal transition (EMT). Taken together, this study suggests that the increase of Shh has an effect on the increases of EMT-related genes and hatching rate of pre-implantation stage embryos, and this may improve implantation subsequently.