A genus Cryptaulus Ôhira (Coleoptera: Elateridae) includes 15 species in Palearctic region and two of them, C. berus (Candèze) and C. larvatus pini (Lewis), have been recorded from South Korea. Recently, a rare species of genus, C. yamato (Nakane) which is regarded as endemic to Japan, was newly discovered from Gwangneung forest, South Korea with a DNA barcode sequence (In press). As results of the present study, a complete mitochondrial DNA genome of Cryptalaus yamato (Nakane), is reported for the first time. The genome consists of 15,882 base pairs including 13 protein coding genes (PCGs), 20 tRNAs, two rRNAs and a 1,279 bp long AT-rich region. The overall base composition is 69.4% AT and 30.6% GC. The maximum likelihood analysis based on nucleotide sequence data of 13 PCGs supported that C. yamato is involved in monophyletic group of Elateridae.