We report on the timing properties of the ‘Crab twin’ pulsar PSR B0540−69 measured with X-ray data taken with the Swift telescope over a period of 1100 days. The braking index of the pulsar was estimated to be n = 0.03±0.013 in a previous study performed in 2015 with 500-day Swift data. This small value of n is unusual for pulsars, and a comparison with an old estimate of n ≈ 2.1 for the same target determined ∼10 years earlier suggests a dramatic change in the braking index. To confirm the small value and therefore the large change of n, we used 1100-day Swift observations including the data used in the earlier determination of n = 0.03. In this study we find that the braking index of PSR B0540−69 is n = 0.163 ± 0.001, somewhat larger than 0.03. Since the measured value of n is still much smaller than 2.1, we can confirm the dramatic change in the braking index for this pulsar.