This research investigated efficient operation mode for the successful performance of SBR(sequencing batch reactor) treating fish processing wastewater, and the effect of sodium chloride (NaCl) on treatment efficiency. 2-hour-annerobic, 6-hour-aerobic and 3-hour-anoxic operation during reaction period was found an effective operating method for organic and nitrogen removal from fish processing wastewater in SBR system. The average removal efficiencies of COD, BOD, and total nitrogen in SBR operated continuousely were 91%, 95%, and 67.1%, respectively. The estimated values of biomass yield coefficient(Y), microbial decay coefficient($K_d$), and bioreaction rate constant(K) were $0.35gMLSS/gCOD_{removed}$, $0.015day^{-1}$, and $0.209hr^{-1}$, respectively. As NaCl concentration increased from 5 to 30g/L, sludge settleability was cnhanced but organic removal in the reactor was decreased. NaCl of influent had considerable relationship with COD removal, whereas it did not significant affect nitrogen removal.