When the radioactive nuclides are leaked from a deep geological repository by groundwater, the migration path of the nuclides is mostly consisted of rock fractures to the surface biosphere. Thus, assessing the safety of the disposed radioactive wastes depends upon understanding of nuclide migration in the fractured rocks. Fractures in rocks tend to dominate the hydrological characteristics of the dissolved nuclides. To study migration of nuclides in the rock fracture, a granite block of 1 m scale was quarried from the Hwangdeung site. The block has a single natural fracture. The six faces of the rock including fracture gaps were sealed with silicone adhesives to prevent leaking or diffusion of the water. Usually flow in fractured rock is unevenly distributed and most of the water flow occures over a small portion of the fracture zone, that is so called channeling flow. It is caused by uneven distribution of apertures in a fracture field. Flow rate is proportional to the cubic of the aperture. Thus, figuring out aperture distribution in a fracture field is the most important step on the study of the migration of nuclides in the fractured region. The ideal way to figure out the aperture distribution in a fractured rock is to use a non-destructive tool such as X-ray tomagraphe. However, it has a limitation of scale, that is, less than about 30 cm. It is not easy to give a good resolution for this quarried rock of 100×60×60 cm scale. It gives complex and vague images of the fracture. The optimum way to get an aperture distribution in a fractured rock is to drill some boreholes to the fracture and to carry out hydraulic tests. The more number of boreholes gives the more accurate information, but the more disturbance to the fracture field. Thus, it is necessary to optimize between aperture information and disturbing fracture field by selecting a suitable number of boreholes. We drilled nine boreholes from the upper surface of the rock mass just to the fracture without penetrating the fracture. And we carried out dipole tests for the matrix set of 9 boreholes. From each dipole test, an effective average aperture was calculated with the data of flow rate and hydraulic head. Then aperture distribution in the fracture field is calculated with a modified Krigging method. As a result, the aperture is distributed in the range of about 0.03~0.16 mm.