In the wake of the Fukushima NPP accident, research on the safety evaluation of spent fuel storage facilities for natural disasters such as earthquakes and tsunamis has been continuously conducted, but research on the protection integrity of spent fuel storage facilities is insufficient in terms of physical protection. In this study, accident scenarios that may occur structurally and thermally for spent fuel storage facilities were investigated and safety assessment cases for such scenarios were analyzed. Major domestic and international institutions and research institutes such as IAEA, NEA, and NRC provide 13 accident scenario types for Spent Fuel Pool, including loss-of-coolant accidents, aircraft collisions, fires, earthquakes. And 10 accident scenario types for Dry Storage Cask System, including transportation cask drop accidents, aircraft collisions, earthquakes. In the case of Spent Fuel Pool, the impact of the cooling function loss accident scenario was mainly evaluated through empirical experiments, and simulations were performed on the dropping of spent nuclear fuel assembly using simulation codes such as ABAQUS. For Dry Storage Cask System, accident scenarios involving structural behavior, such as degradation and fracture, and experimental and structural accident analyses were performed for storage cask drop and aircraft collision accidents. To evaluate the safety of storage container drop accidents, an empirical test on the container was conducted and the simulation was conducted using the limited element analysis software. Among the accident scenarios for spent fuel storage facilities, aircraft and missile collisions, fires, and explosions are representative accidents that can be caused by malicious external threats. In terms of physical protection, it is necessary to analyze various accident scenarios that may occur due to malicious external threats. Additionally, through the analysis of design basis threats and the protection level of nuclear facilities, it is necessary to derive the probability of aircraft and missile collision and the threat success probability of fire and explosion, and to perform protection integrity evaluation studies, such as for the walls and structures, for spent fuel storage facilities considering safety evaluation methods when a terrorist attack occurs with the derived probability.