Korea Atomic Energy Research Institute is developing a radionuclide management processes as a conditioning technology to reduce the burden of spent fuel disposal. The radionuclide management process refers to a process managing radionuclides with similar properties by introducing various technology options that can separate and recover radionuclides from spent fuels. In particular, it is a process aimed at increasing disposal efficiency by managing high-heat, high-mobility, and high-toxic radionuclides that can greatly affect the performance of the disposal system. Since the radionuclide management process seeks to consider various technology options for each unit process, it may have several process flows rather than have a single process flow. Describing the various process flows as a single flow network model is called the superstructure model. In this study, we intend to develop a superstructure model for the radionuclide management process and use it as a model to select the optimal process flow. To find the optimal process flow, an objective function must be defined, and at the fuel cycle system level multiple objectives such as effectiveness (disposal area), safety (explosure dose), and economics (cost) can be considered. Before performing the system-level optimization, it is necessary to select candidates of process flow in consideration of waste properties and process efficiency at the process level. In this study, a sensitivity analysis is conducted to analyze changes in waste properties such as decay heat and radioactivity when the separation ratio varies due to the performance change for each unit process of the radionuclide management process. Through this analysis, it is possible to derive a performance range that can have waste properties suitable for following waste treatment, especially waste form manufacturing. It is also possible to analyze the effect of waste properties that vary according to the performance change on waste storage and management approaches.