In this study, in order to develop an eco-friendly filtration method that considers the health and safety of the aquatic ecosystem by differentiating it from chemical methods (coagulants, oxidants, etc.), which are mainly used as methods for managing the removal of algae in the algal bloom stage, an effective separation membrane for algae removal was reviewed, an appropriate technology was proposed through field application, and the effect of algae removal was evaluated. The membrane used was applied in the field by constructing an optimal technology through auxiliary facilities with an immersion tubular membrane and a pressurized tubular membrane resistant to adhesive pollutants and algae. As a result, the strong characteristics of Fouling (blocking) by adhesive algae were confirmed, and the effect of removing algae and particulate matter in the immersion type tubular membrane was 99% chlorophyll-a (Chl-a), 99.2% suspended solid (SS), and 96.7% of pressurized tubular membranes, showing excellent effects in removing algae and particulate organic matter. In addition, as a result of field application to eutrophic reservoirs where high-density algae are distributed, it was confirmed that stable operation of algae was possible during the process of filtering, separation, and concentration.