This study analyzed policy measures to comprehensively achieve two goals: carbon neutrality in buildings and optimization of indoor air quality. While buildings account for approximately 40% of total energy consumption and greenhouse gas emissions, and present-day individuals spend 90% of their daily lives indoors, both goals are critically important. However, these objectives often conflict with each other, and current policies have limitations in effectively addressing this complex relationship. Analysis of related policies, including the Green Building Creation Support Act and the Indoor Air Quality Management Act, revealed significant drawbacks such as the lack of an integrated approach due to policy fragmentation, insufficient consideration of lifecycle carbon emissions, imbalance in economic incentive structures, and rigidity in technical standards. To overcome these challenges, this study proposes innovative improvement measures, including the following: establishing an integrated policy framework, introducing a multi-layered air quality management system, expanding performance-based design that simultaneously considers energy efficiency and indoor air quality, developing region-specific policies, implementing AI-based self-assessment systems, mandating green space ratios, controlling high-radon concentration areas, and expanding government incentives.