The gut microbiota plays a crucial role in livestock health, nutrient utilization, and environmental sustainability. This study evaluated the effects of a lactic acid bacteria (LAB)-based probiotic formulation, produced via a proprietary dual-fermentation process and containing Lactobacillus paracasei and Lactobacillus buchneri (≥ 2.5 × 10⁸ CFU/g), on the gut microbial community structure and production performance of fattening pigs. A field trial was conducted on a commercial farm using two cohorts: a control group (n = 1,045) receiving a standard diet and an experimental group (n = 1,092) receiving the same diet supplemented with the probiotic formulation over a five-month fattening period. Production parameters including admission weight, shipment weight, carcass weight, and mortality were recorded. Pre-supplementation fecal samples were analyzed by 16S rRNA gene sequencing, whereas post-supplementation samples were assessed by culture-based isolation followed by 16S rRNA gene sequencing of dominant isolates. During the trial, an unrelated porcine epidemic occurred on the farm, resulting in elevated mortality across both groups (14.07% control vs. 14.10% experimental). Despite this, the experimental group exhibited a higher average shipment weight (110.84 kg vs. 110.12 kg) and average carcass weight (80.64 kg vs. 79.02 kg) compared with the control. Microbiome analysis revealed that pre-supplementation samples were dominated by Clostridium (25.2%) and Weissella (23.5%) at the genus level, whereas culture-based analysis of post-supplementation samples identified beneficial Bacillus species, including B. velezensis, B. siamensis, and B. megaterium, together with Oceanobacillus sojae. These findings indicate that the LAB-based probiotic formulation can reshape the porcine gut microbiota by suppressing potentially pathogenic genera and enriching probiotic-functional taxa, with concomitant improvements in carcass yield. The results support the use of microbiome-based feed additives as a sustainable strategy to enhance swine productivity and contribute to carbon-reduction efforts in the livestock industry.