The effects of forest type and fragmentation of forests by a road on the beetle community were investigated in the Gwangneung Forest, South Korea. Beetles were collected monthly using pitfall traps and by sweeping at 16 sites (eight in coniferous forests and eight in deciduous forests) for one year from April 1993 to April 1994, excluding winter. A total of 17,616 beetles belonging to 271 species from 39 families were collected. Among them, Synuchus cycloderus was the dominant species, with 14,060 individuals accounting for 80% of the total population. The influence of forest type (coniferous and deciduous) or sampling region (fragmented by a road) on species richness (number of species) was observed. We found that species richness was substantially different depending on the sampling method and taxa used. Beetles collected using pitfall traps responded more sensitively to habitat types than those collected by sweeping. Four dominant families differently responded to forest fragmentation and forest types. Carabidae was influenced by forest fragmentation, whereas Staphylinidae and Curculionidae were influenced by forest types. Chrysomelidae was not influenced.
Rice germplasm collections continue to grow in number and size around the world. Since maintaining and screening such massive resources remain as a great challenge, it is important to establish piratical ways to manage them. A core collection, by definition, refers to a subset of entire population but preserves most of the possible genetic diversity, enhancing the efficiency for germplasm utilizations. Here we reports the whole genome resequencing of the 137 Korean rice core set (KRICE_CORE) that represents 25,604 rice germplasms deposited in Korean genebank of Rural Development Administration (RDA). We implemented the Illumna HiSeq 2000 and 2500 platform to produce short reads and then assembled those with 9.8x depth using Nipponbare as a reference. Comparisons of the sequences with the reference genome yield more than 15 million(M) single nucleotide polymorphisms (SNPs) and 1.3M insertion/deletion (INDELs). Phylogenetic and population analyses using 2,046,529 high quality SNPs successfully assigned each rice accessions to the relevant subgroups, suggesting those SNPs comprehensively capture evolutionary signatures accumulated in rice subpopulations. Furthermore, genome-wide association studies (GWAS) for 4 exemplary agronomic traits from the KRIC_CORE manifest the utility of KRICE_CORE, identifying previously defined gene or novel genetic polymorphisms that potentially regulate the important phenotypes. This study provides strong evidences that the size of KRICE_CORE is small but contains such a high genetic and functional diversity across the genome. Thus those resequencing results will be useful for future breeding, functional and evolutionary studies in the post-genomic era.