Concerns about water quality in the Nakdong River have been raised because the Nakdong River will change from a lotic environment to a lentic environmental due to the installation of eight weirs to be constructed as part of the Four Major Rivers Restoration Project. The rapid urbanization and industrialization of the middle and the lower reaches of Nakdong River causes the indiscreet discharge of uncleanly living sewage and industrial wastewater. And the water quality of lower reaches of Nakdong River is getting seriously worse. Owing to the water shortage of Nakdong River and the closing of reaches because of the estuary dyke in the dry season, the velocity of a moving fluid is almost accumulated under 0.03m/sec. Then a pollutant is piled up on the bottom of the river. Polluted sediment is formed and nutrition level of water is increased more and more. The eutrophication state propagated to dark brown or green from eutrophication often comes out. Therefore in this study, we measured Chl. a of chlorophyll sensor (YSI6600V2) and aceton extraction through field observation in the Nakdong River and Samrangjin. And we evaluated the reliability of chlorophyll sensor. In correlation analysis between chlorophyll sensor and aceton extraction, it shows high relation in general. And it also shows high relation among the chlorophyll sensor and aceton extraction of the dominant diatom (Skeletonema costatum), Dinophyta (Prorocentrum minimum) in the Nakdong River estuary by laboratory analysis results.