Two lab-scale trickle-bed type biofilters with a single fungal species (Aspergillus fumigatus, Acidomyces acidophilus, respectively) have been studied to investigate the simultaneous removal of inorganic (hydrogen sulfide) and organic (butyl acetate) compounds. The biofilter with Aspergillus fumigatus treated simultaneously two different compounds with removal capacity of 1,511 mgS/m3/hr and 6,324 mgC/m3/hr; and the biofilter inoculated with Acidomyces acidophilus had the removal capacity of 1,254 mgS/m3/hr and 6,045 mgC/m3/hr. Stable operational performance was observed in both biofilters under an acidic condition of pH 2 to 4. Based on pseudo-first-order removal rates as a function of depth in the biofilter, Aspergillus fumigatus showed a twice faster rate of hydrogen sulfide removal than Acidomyces acidophilus, 15.9% (Aspergillus fumigatus) and 17.9% (Acidomyces acidophilus) of total sulfur removed were oxidized to produce sulfates, and 77.8% (Aspergillus fumigatus) and 79.4% (Acidomyces acidophilus) were accumulated in the form of S0 through the bed in both biofilters, respectively.