An algal assay procedure using an indigenous phytoplankton assemblage was tested to estimate the propagation of red tide phytoplankton species and determine the optimal time interval at which to measure growth yield in eutrophic marine waters where red tides frequently occur. Various red tide phytoplankton species were propagated on a large scale by adding nitrogen or phosphorous. This procedure was useful for estimating the limiting nutrient, elucidating the mechanisms underlying red tides, and determining the levels of increases in organic matter in eutrophic coastal waters. The algal assay using indigenous C. polykrikoides showed that this species did not always propagate, apparently because of very low concentrations of trigger elements that are necessary for its growth, rather than as a result of other environmental characteristics, e.g., water temperature or stress from sampling. In the winter, when water temperatures are lower than in spring, summer, or autumn, maximum propagation and the limiting nutrient could be estimated by measuring phytoplankton biomass at 2–3-day intervals. However, in the other seasons, when water temperatures are higher, phytoplankton biomass should be measured at 2-day intervals. In particular, daily monitoring will be required to determine precise growth yields in warm seasons.