This study was conducted to detect the specific fragment genes by using RAPD-PCR and RFLP method in the Korean Tiger cattle and Korean Native cow. And then, the specific fragment gene was investigated by the analysis of the genes for detection significance according to the expressing pattern. We found the specific expression gene by the RAPD-PCR analysis in Korean Tiger cattle. It were a detected the differences of the species in the colour and external section. The Korean Tiger cattle were vary low compare to the Korean Native cattle by analysis result of polymorphism and distribution. And the polymorphism over 500bp into the size classification detected was highly pattern and it could be utilize by the resource of the specific gene. There was a found the specific gene by sequencing in the 1855bp gene fragment of Korean Tiger cattle. And the sequencing result of the R9B was different between Korean Native cow and Holstein cattle. Thus, this gene can be apply as the specific gene in the Korean Tiger cattle.