A shear wall is a structural member designed to effectively resist in-plane lateral forces, such as strong winds and earthquakes. Due to its efficiency and stability, shear walls are often installed in residential buildings and essential facilities such as nuclear power plants. In this research, to predict the results of the shaking table test of the three-story shear wall RC structure hosted by the Korea Atomic Energy Research Institute, three types of numerical modeling techniques are proposed: Preliminary, Calibrated 1, and Calibrated 2 models, in order of improvement. For the proposed models, an earthquake of the 2016 Gyeongju, South Korea (peak ground acceleration of 0.28 g) and its amplified earthquake (peak ground acceleration of 0.50 g) are input. The response spectra of the measuring points are obtained by numerical analysis. Good agreement is observed in the comparisons between the experiment results and the simulation conducted on the finally adopted numerical model, Calibrated 2. In the process of improving the model, this paper investigates the influences of the mode shape, material properties, and boundary conditions on the structure's seismic behavior.