In the safety assessment of the geological disposal system of the radioactive wastes, the abnormal scenarios, in which the system is impacted by the abnormal events, need to be considered in addition to the reference scenario. In this study, characterization and prediction of well intrusion as one of the abnormal events which will impact the disposal system were conducted probabilistically and statistically for the safety assessment. The domestic well development data were analyzed, and the prediction methodologies of the well intrusion were suggested with a computation example. From the results, the annual well development rate per unit area in Korea was about 0.8 well/yr/km2 in the conservative point of view. Considering the area of the overall disposal system which is about 1.5 km2, the annual well development rate within the disposal system could be 1.2 well/yr. That is, it could be expected that more than one well would be installed within the disposal system every year after the institutional management period. From the statistical analysis, the probabilistic distribution of the well depth followed the log-normal distribution with 3.0363 m of mean value and 1.1467 m of standard deviation. This study will be followed by the study about the impacts of the well intrusion on the geological disposal system, and the both studies will contribute to the increased reliability of safety assessment.