Photorespiration reduces carbon fixation rate, but is essential process in plant. Photorespiration involves reactions in chloroplasts, peroxisomes, and mitochondria. In photorepiratory peroxisome, alanine glyoxylate aminotransferase (AGT) catalyzes alanine and glyoxylate into glycine and pyruvate. We isolated a low temperature-inducible cDNA encoding AGT from mungbean leaves. The full-length cDNA, designated as MLT9, contains an open reading frame of 1,203 nucleotides coding for a protein of 401 amino acids. Genomic DNA blotting showed that the mungbean genome has one copy of MLT9. MLT9 mRNA was induced not only by low temperature but also by drought stress, but ABA and NaCl did not induce RNA expression of MLT9. In mungbean, AGT activity was higher in the non-stressed leaves compared to the low-temperature treated leaves. Based on GFP/RFP targeting experiment, GFP-MLT9 fusion protein and SKL-RFP, a peroxisome marker, were colocalized to peroxisome in tobacco protoplasts. This suggests that peroxisomal MLT9 plays a role in photorespiratory metabolism in response to low temperature and drought stress.