Mitochondrial genomes of three specimens of Gadus chalcogrammus Pallas 1,814 from Korea and Japan were completely analyzed by the primer walking method. They were 16,570~16,571 bp in length, each comprising 13 protein-coding genes, two ribosomal RNA genes, and 22 transfer RNA genes. Their gene orders were identical to those of conspecific specimens, but exhibited unique haplotypes. In the phylogenetic tree, the juvenile Korean and adult Japanese specimens were separated from the dominant clade composed of specimens from Japan, Korea, the Bering Sea, and the Arctic, including the adult Korean specimen.

Recent increase of raw sequences generated by next generation sequencing (NGS) machines enabled re-analyzing raw sequences for diverse purposes: one is assembling organelle genome. One recent study completed the mitochondrial genomes of 14 ants from public raw sequences in subfamily Pseudomyrmecinae not having organelle genomes. Along with this approach, we have found four ant species of which genome papers were published and its raw sequences were open to public but its mitochondrial genome has not been assembled yet: Harpegnathos saltator and three Pogonomyrmex species (P. rugosus, P. anergismus, and P. colei). We assembled four complete mitochondrial genomes, presenting mitogenome of H. saltator 16,467 bp long and those of three Pogonomyrmex species above 21 kb long, ranking top among all known Hymenopteran mitogenomes. Four mitochondrial genomes contain 13 PCGs, 22 tRNAs, and 2 rRNAs, conserved as in all other insects. Phylogenomic tree based on partial or complete mitogneomes covering 26 genera provides insights of ant mitogenomic phylogeny and evolution.

A previous studies depicting origin and sequence variability of the species using DNA barcoding region with the samples collected from Korea showed relatively low sequence variability. Thus, additional markers that reveal higher variability were necessitated to scrutinize population structure in connection with dispersal and invasive dynamics among international populations. Therefore, we sequenced two complete mitochondrial genomes (mitogenomes) of M. pruinosa from the two haplotypes occurring in Korea (H1 and H3). Comparison of the two mitogenomes each with 16,312 and 16,314 bp evidenced that one region located in the A+T-rich region to provide higher number of haplotypes (4 vs. 3), sequence divergence (1.636% vs. 0.636%), and variable sites (7 vs. 3) than those of DNA barcoding region from the screening test using 13 representative individuals. This variable region, in concatenation with the currently available DNA barcoding region might be useful for population genetic analysis of worldwide populations including those of Korea. †These authors contributed equally to this paper.

To verify the progenitor of B. mori, we sequenced 14 B. mori strains preserved in Korea and one B. mandarina collected in Korea and conducted phylogenetic analysis of Bombycidae using maximum-likelihood method and concatenated sequences of 13 PCGs and 2 rRNA genes. All B. mori strains, regardless of their origin, formed a strong monophyletic group, with the highest nodal support. This B. mori group was placed as the sister to the two B. mandarina collected each from Korea and Shandong, China with the highest nodal support. Finally, the remaining two B. mandarina, which were collected in Japan were independently placed as the most basal lineage of B. mori and B. mandarina group. These results appear to indicate that an immediate ancestor for the domestic silkworm strains may have been originated from China and Korea.

In this study, we sequenced two complete mitogenomes, belonging to the families Scythrididae (Scythris sinensis Felder & Rogenhofer, 1775) and Coleophoridae (Coleophora therinella Tengström, 1848) firstly in each family. Gelechioidea is one of the controversial lineages of Lepidoptera in its phylogenetic position and number of families. Phylogenetic analyses with concatenated sequences of the 13 PCGs and two RNA genes using the maximum likelihood method, placed Coleophoridae, represented only by C. therinella, as a sister group to the families Depressariidae and Autostichidae, with very low nodal support (7%). Scythrididae represented only by S. sinensis was placed as the sister to the family Stathmopodidae, with relatively high nodal support (86%). As more mitogenome sequences from the extended taxonomic groups are obtained further robust phylogenetic inference will be possible.

Nilaparvata lugens, brown planthoppers, is one of important pests on rice. Korean N. lugens is migrated from China and causing severe damages on rice in early September in Korea. For identifying biotypes of these N. lugens based on complete mitochondrial genomes, we completed mitochondrial genome of N. lugens captured in Hadong-gun, Gyoungsang-nam province in Korea. The circular mitogenome of N. lugens is 17,610 bp including 13 protein-coding genes, two ribosomal RNA genes, 22 transfer RNAs, and a single large non-coding region of 2,424 bp. The base composition was AT-biased (89.5%). 112 single nucleotide polymorphisms (SNPs) and 59 insertions and deletions are identified by comparing with Chinese N. lugens. Based on phylogenetic trees together with those of N. lugens captured in China, no clear phylogenetic relationship along with five biotypes, requiring more researches to achieve biotype identification including detailed analysis of sequence variations on mitochondrial genomes and whole genome analysis of N. lugens in near future.

The honey bee, Apis mellifera ligustica (Hymenoptera: Apidae), strain with a high hygienic behavior (HHB) has been bred for several years in Korea, and a diagnosis system to distinguish it from low hygienic behavior (LHB) strain has been necessitated. Thus, complete mitogenome of the two strains were sequenced through Next-Generation Sequencing technique to detect SNPs. Comparison of the mitogenome sequences from the two strains of A. m. ligustica have detected 23 SNPs in 11 PCGs and these were further confirmed the presence of SNPs using each 10 individuals selected randomly from each strain, indicating that these SNP markers might be useful to diagnose the honeybee strains with the HHB. Therefore, mitogenome sequences are promising genome source to detect SNP markers, particularly for inbred female iso-lines.

Previous phylogenetic results often showed fluctuating positions of Geometroidea in Macroheterocera, particularly from mitochondrial genome (mitogenome)-based analyses. In this study, we sequenced mitogenomes of four geometrid moths to increase taxon diversity for the inference of phylogenetic positions of Geometroidea in Macroheterocera. The general genomic features found in Macroheterocera also were found in the four geometrid moths. Phylogenetic analyses using 71 representative mitogeneome sequences in Macroheterocera yielded the consensus superfamilial relationships (((((Bombycoidea + Lasiocampoidea) + Geometroidea) + Noctuoidea) + Drepanoidea) + Mimallonoidea), confirming the sister relationship of Geometroidea to (Bombycoidea + Lasiocampoidea) in both Bayesian Inference and Maximum-likelihood method.

We sequenced the complete mitochondrial genome (mitogenome) of Vespa velutina nigrithorax and V. ducalis (Hymenoptera: Vespidae). The genomes were 16,475-bp and 15,779-bp long and contained typical sets of genes. The V. velutina and V. ducalis A+T-rich region was 132-bp long and 166-bp long and was the shortest of all sequenced Vespoidea genomes. Start and stop codons in several Vespa species—including V. velutina and V. ducalis—were diversified, despite these species belonging to the same genus. In comparison with the ancestral mitogenomes, Vespa mitogenomes showed substantial gene rearrangement; however, we detected no gene rearrangement among Vespa species. We conducted phylogenetic reconstruction based on concatenated sequences of 13 PCGs and two rRNAs in available species of Vespoidea—22 species in six subfamilies in two families (Vespidae and Formicidae). The Bayesian inference and maximum likelihood (ML) methods revealed that each family formed strong monophyletic groups.