The purpose of this study is to analyze the characteristics of riverbed variation due to the sediment protection weir located on the estuary of the main stream of Taehwa river using 1-D finite difference model, HEC-6 model, and the followings are the results of estimating sediment transport rate, amount of scour or deposition, and accumulated amount of deposit according to before and after of the sediment protection weir removal with various flow rates in the channel. Ackers-White transport function produced the greatest sediment transport rate while Meyer-Peter showed the smallest sediment transport rate at the most down stream area of the watershed through the sediment transport rate analyses for various flow rates according to the existence or nonexistence of the sediment protection weir. Toffaleti's and Colby transport function were closest to the average value, and the difference among the results of the sediment transport functions showed up to 8～9 times. Duboy’s transport function produced the greatest riverbed variation while Toffaleti’s showed the smallest variation through the riverbed variation analyses according to the existence or nonexistence of the sediment protection weir. Yang’s was closest to the average value, and the difference among the results of the riverbed variation analyses ranged from 1.4 times to 11 times. It is thought that a sediment transport function must be selected very carefully with respect to the criteria of sediment yield estimation because the analysis results of the sediment transport rate and riverbed variation according to flow rates showed significant differences among the sediment transport functions, and the differences of sediment transport rate and riverbed variation according to the various sediment transport functions decreased as the flow rate increased.