It is very important to quantitatively assess the movement of sea water and pollutant dispersion before or after constructing shore structures such as breakwater considering marine environment and long-term utilization of those structures. This assesment is possible through the use of simulation models designed to predict water movement and pollutant dispersion in a certain area. In this study the numerical computations were carried out to predict the sea water quality in the Ilgwang Harbor located at the east coast of Pusan. The flow patters were investigated before and after the development of Ilgwang Harbor. The computational models adopting ADI Method (Alternating Direction Implicit Method) were used here and were already verified from the previous studies. As a results of this study the tidal exchange in Ilgwang Harbor after development proved to be worse due to the increased semi-enclosed at the harbor limit. In order to improve the water quality of this area after development a new method was proposed to improve water quality in the semi-enclosed bay by creation and control of tidal residual currents. For this purpose the unsymmetric structures so called bottom roughness were introduced in this study. The simulation was carried out on the basis of the study by Komatsu et. al. and Gug and we made a conclusion that it is possible to generate a new tidal residual current and to increase the tidal exchange by application of bottom roughness arrangement.