Chungbuk province has number of management honey bee(Apis cerana) colonies. A. cerana produce honey, and are pollinators with in agricultural crops and natural environmental ecosystems. Korean Sacbrood Virus(SBV) causes colony collapses of A. cerana Feb. in Korean apiaries from 2009 years. It causes a fatal disease(sacbrood) of honeybee larvae, which fail to pupate, change color and shape, and finally die. We thus conducted a molecular survey of honey bee RNA viruses, Nosema microsporidia, Foul broods and fungal disease(Chalk brood and Stone brood) associated with environmental conditions in apiaries and differential type(Traditional and Modern) of A. cerana hives in Chungbuk province. We found the presence of Israel Acute Paralysis Virus(IAPV), Nosema apis, and Sacbrood virus(SBV) was detected in the tested samples. IAPV were detected from mordern hive. Nosema apis, and Sacbrood virus(SBV) was detected from traditional hives. Our results demonstrate that honey bee RNA viruse(SBV) and N. apis are present in Traditional hives. It can suggest SBV and other disease might be related environment conditions(Type of hives).