This study was carried out to investigate insect community structure from different habitats. We performed day and night collection at three different habitats (mountain, coast and rural area) of island Deokjeok, island Soya and island Mungap from May to September in 2014. A total of 3,482 individuals of 725 species, 119 families belonging to 10 orders were collected and identified. A dominant species was Corymbia rubra (Cerambycidae) despite a very low percentage of the species among the catches. Results of ANOVA test showed a significant effect of habitats typeon species diversity. Also, combination of seasons and habitats types were significantly influential with species abundance and species diversity. Indicator species analysis (ISA) result identified 121 significant (p < 0.05) indicator species; one species for the habitats cluster, 93 species for the season cluster and 27species for combination of habitats with seasons.