In this study, refined finite element (FE) analyses intended to evaluate the capacity of the existing water purification plant structures against seismic force are conducted with an aim to predict possibility generating tension crack and compression crushing. The FE models for three types of main plant structures were constructed to take ground condition, boundary condition, and water interaction into consideration for advanced simulation. The nonlinear dynamic analyses were performed by using ground motion data which have been used for seismic design. Both compression crushing and tention crack, which are distributed over concrete plant structures during peak ground acceleration (PGA), are investigated by analyzing failure possibility controlled with the strain limits. After observing FE analysis results, it is possible to predict tenstion cracking which can be found at some parts of the main structure.