Burial sites are constructed for the purpose of controlling air-born livestock diseases such as avian influenza and foot-and-mouth outbreak. As most of the burial sites are located in the agricultural land use, public concerns are mounting about soil and groundwater contamination. During precipitation events, contaminated baseflows are released from the burial sites into surface waters. Baseflow are therefore required to be managed properly, by monitoring and even by remediation means. We propose each burial sites should be regarded as a point source possibly degrade groundwater, thus be managed in watershed scale for the purpose of surface water quality conservation.