The Cypripedium japonicum is a species of orchid, distributed mainly in the temperate regions of the Northern Hemisphere. In Korea, C. japonicum is an extremely rare species and class I endangered plant. However, little is known about the plant-microbe interaction and its ecology, especially rhizosphere bacterial communities in terms of structure and diversity in C. japonicum. In this study, the diversity of bacterial communities was investigated in C. japonicum rhizosphere and bulk soil. Proteobacteria, Acidobacteria and Actinobacteria were the most abundant groups in both rhizosphere and bulk soil. Significantly Proteobacteria and Actinobacteria abundantly inhabited in the rhizosphere when compared with the bulk soil. Conversely, significantly more unclassified bacteria were detected in the rhizosphere soil than in the bulk soil. This work increases our understanding of the rhizosphere bacterial diversity on class I endangered plant, C. japonicum.