This review summarizes the history of freshwater zooplankton research in Korean Society of Limnology and necessary future topics that are remain poorly investigated in South Korea based on main research topics of published articles focusing on lakes, reservoirs, rivers and wetland ecosystems. In Korea, a total 450 freshwater zooplankton species have been reported (85 species of cladocera, ca. 230 species of rotifera since 1939, and 138 species of copepoda), and they cover 10% of total zooplankton species list. In the present paper, we provide recent species list of zooplankton found in Korea and their taxonomic keys. Over periods of 45 years, there are 25 published papers for zooplankton biota in lentic ecosystems in Korean Journal of Ecology and Environment (KJEE). The ecology of zooplankton communities in rivers has focused on the mechanisms involved in regulating their abundance, diversity and spatio-temporal patterns of genus Bosmina and rotifers (genus Brachionus and Keratella) that are most frequently found from Korea. On the other hand, the studies on zooplankton in wetland has focused on Alona, Chydorus and Ceriodaphnia with special emphasis on their relationships with aquatic macrophytes. Even though studies on the freshwater ecosystem in Korea have a long history, a few of studies on zooplankton biota were conducted at rice paddy, Dumbeong and wetlands. During the last two decades, experimental advances in freshwater zooplankton ecology and understanding of structure and function of this biota were made from a series of articles mainly in journal of KJEE. For future studies, quantitative, experimental and interdisciplinary approaches would be key words to understand zooplankton ecology and their roles in aquatic ecosystems under changing environments, and we have suggested necessary zooplankton research fields and future directions.