Spatial structure does not have columns and walls installed inside, so they have a large space. There are upper structure and substructure supporting them. The response of seismic loads to the upper structure may be increased or decreased due to the effects of the substructure. Therefore, in this study, the seismic response of the upper structure and the floor response spectrum of the substructure were compared and analyzed according to the height of the substructure in the spatial structure where the LRB was installed. As a result, the possibility of amplification of response was confirmed as seismic waves passed though the substructure, which is likely to increase the response of the upper structures.