The remote dismantling system proposed in this paper is a system that performs the actual dismantling process using the process and program predefined in the digital manufacturing system. The key to the successful applying this remote dismantling system is how to overcome the problem of the difference between the digital mockup and the actual dismantling site. In the case of nuclear facility decommissioning, compensation between the virtual world and the real world is difficult due to harsh environments such as unsophisticated dismantling sites, radiation, and underwater, while offline programming can be proposed as a solution for other industries due to its sophisticated and controllable environment. In this paper, the problem caused by the difference in the digital mockup is overcome through three steps of acquisition of 3D point cloud in radiation and underwater environment, refraction correction, and 3D registration. The 3D point cloud is acquired with a 3D scanner originally developed in our laboratory to achieve 1 kGy of radiation resistance and water resistance. Refraction correction processes the 3D point cloud acquired underwater so that the processed 3D point cloud represents the actual position of the scanned object. 3D registration creates a transformation matrix that can transform a digital mockup of the virtual world into the actual location of a scanned object at the dismantling site. The proposed remote dismantling system is verified through various cutting experiments. In the experiments, the cutting test object has a shape similar to the reactor upper internals and is made of the same material as the reactor upper internals. The 105 successful experiments demonstrate that the proposed remote dismantling system successfully solved the key problem presented in this paper.