This study was carried out to get information on the concentration and species of airborne fungi in wood ear mushroom (Auricularia heimuer) cultivation houses. Air samplings were conducted at three wood ear mushroom farms located in Iksan and Wando in 2022. Two out of the three cultivation houses exceeded the Ministry of Environment’s recommended indoor air quality standards for fungi concentration in multi-use facilities. A total of 12 genera and 15 species of airborne fungi were isolated and identified. There were species belonging to 6 genera at the genus level. Overall, the genus Cladosporium accounted for the majority with three species. Among the identified species, there were fungi that affect the human body, such as Aspergillus niger, Lichtheimia ramose, and Rhizomucor pusillus, as well as Alternaria alternata, Cladosporium ramotenellum, Cladosporium subuliforme, and Curvularia lunata, which cause diseases in plants. Penicillium brevicompactum was detected as a fungus affecting mushroom cultivation. This study is the first report in Korea on airborne fungi in wood ear cultivation houses and provides useful information for environmental hygiene management of cultivation houses.