Fish community structure and species diversity in stream ecosystems at four Korean national parks (Seoraksan, Woraksan, Deogyusan, and Hallyeohaesang) revealed by eDNA metabarcoding
National parks serve as protected areas that ensure the sustainable use of representative natural ecosystems. In South Korea, approximately 46% of the nation’s total species and 65% of its endangered species inhabit national parks. Comprehensive resource surveys have been conducted every 5 years in accordance with the Natural Parks Act to safeguard these invaluable biological resources. However, species identification in these surveys still largely relies on traditional methods, which are time-consuming and labor-intensive, and often subject to investigator bias. This study investigated freshwater fish communities in stream ecosystems at four national parks-Seoraksan, Woraksan, Deogyusan, and Hallyeohaesang-using environmental DNA (eDNA) metabarcoding to evaluate the consistency of its results with those of conventional surveys. A total of 33 fish species (five orders, 11 families) were recorded in both methods. eDNA detected 31 species (detection rate: 93.9%), whereas conventional methods identified 22 species (66.7%). However, species richness values were significantly correlated between the two methods. eDNA exhibited higher detection efficiency (88.7-100.0%) across all parks than conventional methods (64.3-72.2%). Six endangered species were identified in total, four of which (66.7%) were detected by eDNA. The results indicate that eDNA metabarcoding provides a more sensitive, efficient, and reliable tool for assessing freshwater fish diversity in national parks than conventional methods. Overall, eDNA offers a valuable complement or potential alternative to conventional survey methods for the long-term monitoring of freshwater fish biodiversity.