Domestic nuclear power plants can affect the environment if multiple devices are operated on one site and even a trace amount of pollutants that may affect the environment after power generation are simultaneously discharged. Therefore, not only radioactive substances but also ionic substances such as boron should be discharged as minimally as possible. We adopted pilot CDI and SD-ELIX sytem to separating and concenrating of boron containing nulcear power plant discharge water. The boron concentration of the initial inflow water tended to decrease over time. The water quality of concentrated water also reached its peak until the initial 60 minutes, but tended to decrease in line with the decrease in the inflow water concentration. The boron removal rate was in the range of 85 to 99% with respect to the initial boron concentration of 15 to 25 mg/L. On the other hand, performance degradation due to the use of electrochemical modules is also observed, and regeneration through low ion-containing water cleaning effective. We shortened processing time by considering the optimal flow rate conditions and conductivity conditions and converting electrochemical modules into series or parallel.