It is very important that the confinement of a spent fuel storage systems is maintained because if the confinement is damaged, the gaseous radioactive material inside the storage cask can leak out and have a radiological impact on the surrounding public. For this reason, leakage rate tests using helium are required for certificate of compliance (CoC) and fabrication inspections of spent fuel storage cask. For transport cask, the allowable leakage rate can be calculated according to the standardized scenario presented by the IAEA. However, for storage cask, the allowable leakage rate is determined by the canister, facility, and site specific information, so it is difficult to establish a standardized leakage rate criterion. Therefore, this study aims to establish a system that can derive system-specific leakage test criteria that can be used for leakage test of actual storage systems. First, the variables that can affect the allowable leakage rate for normal and accident conditions were derived. Unlike transportation systems, for storage systems, the dose from the shielding analysis and the dose from the confinement analysis are summed up to determine whether the dose standard is satisfied, and even the dose from the existing nuclear facilities is summed up during normal operation condition. For this reason, the target dose is used as an input variable when calculating the allowable leakage rate for the storage system. In addition, the main variables are the distance from the boundary of the exclusive area, the number of cask, the inventory of nuclide material in the cask, the free volume, and the internal and external pressure. Utilizing domestic and US NRC guidelines, we derived basic recommended values for the selected variables. The GASPARII computer code that can evaluate the dose to the public under normal operating conditions was utilized. Using the above variables, the allowable leakage rate is calculated and converted to the allowable criteria for helium leakage rate test. The developed system was used to calculate the allowable leakage rate for normal and accident conditions for a hypothetical storage system. The leakage rate criteria calculation system developed in this study can be useful for CoC and fabrication inspections of storage systems in the future, and a GUI-based program will be built for user convenience.