In case of stone pagoda structures, the various construction types appear, and various damages occur due to exposure to the outdoors for a long time. Such damages can be classified into non-structural damages and structural damages. However, studies for the effects of structural damages on stone pagoda structures are insufficient. Accordingly, this study intends to perform structural modeling and structural analysis according to structural damages of stone pagoda structure, and to perform risk analysis through the fragility curve. So, we expects that this study gives a great contribution to the preservation and maintenance of stone pagoda structures under the various structural damages.