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Resequencing 295 accessions of heuristic and Korean breeding rice deciphers the milestones for breeding and domestication history of Korean rice

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  • URLhttps://db.koreascholar.com/Article/Detail/297946
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한국육종학회 (The Korean Breeding Society)
초록

As one of the most important crop, rice is not only a staple food of half world’s population but a wonderful model plant, which has been leading the evolution and functional genomics study. The next-generation sequencing technology are expediting rice genomic study, by providing a simple but powerful way. In this study, we re-sequenced a core collection of 137 rice accessions from all over the world along with 158 Korean breeding varieties. Finally, 6.3G uniquely mapped reads were obtained, and about 10 million SNPs and ~1.2 million InDels were identified with average sequencing depth of 7.5X. These will help us to maximize our germplasm utilization and assists all the deep research in population dynamics and functional studies. Here, we’d like to show the approaches applied to resequencing data mining and on-going activities.

저자
  • Qiang He(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Byung-Kook Yun(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Min-Young Yoon(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Xiao-Qiang Wang(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Feng-Peng Li(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Aye-Aye Khaing(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Won-Hee Ra(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Win Htet Oo(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Cheol-Soon Park(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Sun-Kyung Min(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Wei Tong(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Jie Yu(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Bu-Woong Choi(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Eun-Beom Heo(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Khandakar Md.Rayhanul Kabir(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Tae-Sung Kim(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Yoo-Hyun Cho(Department of Plant Resources, College of Industrial Sciences, Kongju National University)
  • Chang-Yong Lee(Department of Industrial & Systems Engineering, Kongju National University, Legume Bio-Resource Center of Green Manure (LBRCGM), Kongju National University)
  • Yong-Jin Park(Department of Plant Resources, College of Industrial Sciences, Kongju National University, Legume Bio-Resource Center of Green Manure (LBRCGM), Kongju National University) Corresponding Author