Due to the high risk of personal injury and property damage, the safety of maritime transport is an important concern for everyone involved. Ship navigation officers usually look up a ship's collision profile for safety-at-sea information before entering an unknown coastal area. Near-ship collisions are very important when assessing the potential risk of shipping. This paper undertakes a ship encounter risk assessment, involving analyses of the trajectory data of merchant ships and then extracts ship encounter data, creates a probabilistic model to determine whether an encounter event is a near miss, and suggests risk indicators. The proposed method will be useful for navigators to plan safe passages.